Hi,
well, it depends. APNG unlike GIF allows to specify a blending mode for a frame in addition to dispose method. This means that it is possible to restore transparency to a region even if using PNG_DISPOSE_OP_NONE.
The encoder tries to produce smallest possible file sizes and depending on the actual image content, it uses different combinations blending and dispose modes.
I am not saying there cannot be an error in the encoder, but only using APNG_DISPOSE_OP_NONE may still be correct in some cases. An easy way to see whether the saved APNG file is OK or not is to open it in Firefox. If there are glitches, please send me a .rli file that when simply saved as animated png produces these glitches and I'll try to diagnose the problem and fix it.
V.